Genome biology

deMULTIplex2: robust sample demultiplexing for scRNA-seq.

Genome biology

Zhu Q, Conrad DN, Gartner ZJ

AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data.

Genome biology

Thibodeau A, Eroglu A, McGinnis CS, Lawlor N, Nehar-Belaid D, Kursawe R, Marches R, Conrad DN, Kuchel GA, Gartner ZJ, Banchereau J, Stitzel ML, Cicek AE, Ucar D

Linked optical and gene expression profiling of single cells at high-throughput.

Genome biology

Zhang JQ, Siltanen CA, Liu L, Chang KC, Gartner ZJ, Abate AR

Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts.

Genome biology

Ntranos V, Kamath GM, Zhang JM, Pachter L, Tse DN

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deMULTIplex2: robust sample demultiplexing for scRNA-seq.

AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data.

Linked optical and gene expression profiling of single cells at high-throughput.

Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts.

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Support Engineering Innovations at UCSF